publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2024

  1. If LLM Is the Wizard, Then Code Is the Wand: A Survey on How Code Empowers Large Language Models to Serve as Intelligent Agents
    Ke Yang, Jiateng Liu, John Wu, and 9 more authors
    2024
  2. DILA: Dictionary Label Attention for Mechanistic Interpretability in High-dimensional Multi-label Medical Coding Prediction
    John Wu, David Wu, and Jimeng Sun
    2024
  3. EMNLP
    Beyond Label Attention: Transparency in Language Models for Automated Medical Coding via Dictionary Learning
    John Wu, David Wu, and Jimeng Sun
    In Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing , Nov 2024

2023

  1. BioNetGMMFit: estimating parameters of a BioNetGen model from time-stamped snapshots of single cells
    John Wu, William C. L. Stewart, Ciriyam Jayaprakash, and 1 more author
    npj Systems Biology and Applications, Sep 2023
  2. AAAI
    A Reflection on AI Model Selection for Digital Agriculture Image Datasets
    Seth Ockerman, John Wu, Christopher Stewart, and 1 more author
    In 2nd AAAI Workshop on AI for Agriculture and Food Systems , Sep 2023

2022

  1. Generalized Method of Moments improves parameter estimation in biochemical signaling models of time-stamped single-cell snapshot data
    Wu John, William CL Stewart, Jayaprakash Ciriyam, and 1 more author
    bioRxiv, Sep 2022
  2. A Case for Dataset Specific Profiling
    Seth Ockerman, John Wu, and Christopher Stewart
    Sep 2022